Antiviral immunity via telomerase-like reverse transcription in bacteria

Defense-associated reverse transcriptases (DRTs) employ diverse and distinctive mechanisms of cDNA synthesis to protect bacteria against viral infection1. However, the functions and mechanisms of many DRTs remain unknown2. Here we identify a new antiviral defense system, DRT10, that associates with a noncoding RNA (ncRNA) to catalyze processive, protein-primed synthesis of tandem-repeat DNA. Reverse transcription is templated by a defined ncRNA region with a characteristic sequence pattern and template boundary elements, both of which are conserved and essential for DNA repeat addition. Cryo-EM reconstructions reveal an unanticipated 2:1 architecture, wherein two RT monomers bind opposite sides of a pseudo-symmetric ncRNA. Biochemical experiments further demonstrate that each RT monomer reverse transcribes the template encoded on its respective side of the ncRNA, but only one generates the long repetitive product, whose template is defined by the distance between two flanking stem-loop anchors. This mode of iterative, boundary-delimited cDNA synthesis exhibits direct parallels to the mechanism of telomeric repeat addition by eukaryotic telomerase, and phylogenetic analyses of RTs across domains of life place telomerase in a monophyletic clade with the DRT family, suggesting a common origin for their DNA polymerization activities. Together with earlier studies of DRT2, DRT3, and DRT93–5, our findings identify a conserved mechanistic logic underlying RNA-templated DNA repeat addition across diverse DRTs, despite vastly different architectural solutions, and expand the repertoire of reverse transcription-based strategies for antiviral immunity in bacteria.

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Author notes
  1. Dennis J. Zhang

    Present address: Stanford School of Medicine, Stanford University, Stanford, CA, USA

  2. These authors contributed equally: Stephen Tang, Josephine L. Ramirez, Qixiang He

Authors and Affiliations

  1. Stephen Tang, Josephine L. Ramirez, Qixiang He, Tanner Wiegand, Megan Wang, George D. Lampe & Samuel H. Sternberg

  2. Howard Hughes Medical Institute, Columbia University, New York, NY, USA

    Qixiang He, Tanner Wiegand, George D. Lampe & Samuel H. Sternberg

  3. Section of Microbiology, University of Copenhagen, Copenhagen, Denmark

    Mario Rodríguez Mestre, Dennis J. Zhang & Rafael Pinilla-Redondo

  4. Simons Electron Microscopy Center, New York, NY, USA

  5. Department of Biological Sciences, Columbia University, New York, NY, USA

    Yanzhe Ma & Marko Jovanovic

  6. Ikerbasque, Basque Foundation for Science, Bilbao, Spain

    Israel S. Fernández

  7. Instituto Biofisika (UPV/EHU, CSIC), University of the Basque Country, Leioa, Spain

    Israel S. Fernández

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Corresponding authors

Correspondence to Stephen Tang, Israel S. Fernández or Samuel H. Sternberg.

Supplementary information

Supplementary Information (download PDF )

This file contains Supplementary Notes 1-4, Supplementary Figs. 1-7, and Supplementary References.

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This file contains Supplementary Tables 1-12.

Supplementary Data (download ZIP )

This zipped file contains Supplementary Data 1-4. Supplementary Data 1: Multiple sequence alignment of RT domains for the Fig. 6b phylogenetic tree. Supplementary Data 2: Annotation file for Supplementary Data 3–4 tree files. Supplementary Data 3: Phylogenetic tree in Fig. 6b with SH-like local support and alignment-ensemble TBE support values. Supplementary Data 4: Structure-based neighbor-joining tree in Extended Data Fig. 10a.

Supplementary Data (download XLSX )

Source Data for Figs. 1-5, Extended Data Figs. 1-7 and 9, and Supplementary Figs. 2 and 6.

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Tang, S., Ramirez, J.L., He, Q. et al. Antiviral immunity via telomerase-like reverse transcription in bacteria. Nature (2026). https://doi.org/10.1038/s41586-026-11250-8

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  • DOIhttps://doi.org/10.1038/s41586-026-11250-8

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